Over-representation analysis in GenMAPP-CS

GenMAPP-CS supports over-representation analysis on pathways and GO terms using the GO-Elite program. Over-representation analysis options are user-controlled and analysis can be performed based on custom coloring criteria, node lists or networks. Pathway results are interactive and pathways open with the relevant color criteria displaced.

Detailed instructions for this workflow are available at Open Tutorials.

Brief instructions

Detailed tutorial

Import your data to GenMAPP-CS

Create color criteria

Run over-representation analysis with GO-Elite

View GO-Elite results

View over-represented pathways